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| Mendeliome v2.328 | GRIPAP1 |
Sangavi Sivagnanasundram gene: GRIPAP1 was added gene: GRIPAP1 was added to Mendeliome. Sources: Literature Mode of inheritance for gene: GRIPAP1 was set to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males) Publications for gene: GRIPAP1 were set to 28285821 Phenotypes for gene: GRIPAP1 were set to GRIPAP1-related neurodevelopmental disorder MONDO:0001071 Review for gene: GRIPAP1 was set to AMBER Added comment: PMID 28285821 (reports gene alias GRASP1) reports three individuals (2 sibs) from two unrelated X‑linked families with severe intellectual disability. Mouse Grasp1 knockout recapitulates learning and memory deficits; wild‑type GRIPAP1 rescues spine loss, whereas the patient missense mutants fail to rescue, demonstrating loss‑of‑function. Two missense vairants were identified. Both present in gnomAD v4.1 c.2465G>A R822Q- PopMax AF0.12% in AJ population but NFE PopMax AF is 0.0003368%, 1 hemozygote also reported. c.218G>A S73N - too common for XLD condition, FAF 0.4%, 7 homs and 1263 hemizygotes Sources: Literature |
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| Mendeliome v2.106 | SPMIP10 |
Lucy Spencer gene: SPMIP10 was added gene: SPMIP10 was added to Mendeliome. Sources: Literature Mode of inheritance for gene: SPMIP10 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: SPMIP10 were set to 42174372 Phenotypes for gene: SPMIP10 were set to Spermatogenic failure, MONDO:0004983, SPMIP10-related Review for gene: SPMIP10 was set to RED Added comment: PMID: 42174372 - using the gene name alias TEX43. Identified 5 individuals with asthenoteratozoospermia and variants in TEX43 (SPMIP10) . This included one missense Arg37Gln (47 hets in gnomad v4), a variant in the 5'UTR c.-23T>A (>13,000 homs in gnomad) and 2 intronic variants c.86+141G > A and c.196-25C>T (>8000 homs in gnomad). The intronic and UTR variants were observed in different combinations in 4 patients, while the missense variant was observed in one patient and by itself. Sources: Literature |
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| Mendeliome v2.0 | LIAS | Gene migrated from ENSG00000121897 to ENSG00000121897 (gene set migration) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v1.3338 | RNF31 | Zornitza Stark Added comment: Comment when marking as ready: Alias: HOIP | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.12071 | LIAS | Alison Yeung Marked gene: LIAS as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.12071 | LIAS | Alison Yeung Gene: lias has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.12071 | LIAS | Alison Yeung Phenotypes for gene: LIAS were changed from to Hyperglycinemia, lactic acidosis, and seizures, MIM# 614462 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.12070 | LIAS | Alison Yeung Publications for gene: LIAS were set to | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.12069 | LIAS | Alison Yeung Mode of inheritance for gene: LIAS was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.12068 | LIAS | Alison Yeung reviewed gene: LIAS: Rating: GREEN; Mode of pathogenicity: None; Publications: 22152680, 24334290, 26108146; Phenotypes: Hyperglycinemia, lactic acidosis, and seizures, MIM# 614462; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.11107 | AL117258.1 | Zornitza Stark Added comment: Comment when marking as ready: HGNC approved name is CIROP. Previous alias LMLN2. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mendeliome v0.8201 | HEATR5B |
Teresa Zhao gene: HEATR5B was added gene: HEATR5B was added to Mendeliome. Sources: Literature Mode of inheritance for gene: HEATR5B was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: HEATR5B were set to PMID: 33824466 Phenotypes for gene: HEATR5B were set to pontocerebellar hypoplasia Review for gene: HEATR5B was set to AMBER Added comment: Four affected children from two families presenting with pontocerebellar hypoplasiawith neonatal seizures, severe ID and motor delay. Two homozygous splice variants were reported ((c.5051–1G>A and c.5050+4A>G) in intron 31 of HEATR5B gene. Aberrant splicing was found in patient fibroblasts, which correlated with reduced levels of HEATR5B protein. Homozygous knockout mice were not viable. *NOTE: gene (and alias) not found in OMIM Sources: Literature |
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| Mendeliome v0.1325 | MAP3K20 |
Bryony Thompson gene: MAP3K20 was added gene: MAP3K20 was added to Mendeliome. Sources: Expert list Mode of inheritance for gene: MAP3K20 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: MAP3K20 were set to 27816943; 26755636 Phenotypes for gene: MAP3K20 were set to Centronuclear myopathy 6 with fiber-type disproportion MIM#617760; Split-foot malformation with mesoaxial polydactyly MIM#616890 Review for gene: MAP3K20 was set to GREEN Added comment: 3 unrelated consanguineous families homozygous for 3 different variants with centronuclear myopathy, and at least 2 families reported with split-foot malformation. Null mouse model is embryonic lethal due to severe cardiac edema and growth retardation. Gene alias of ZAK used in the published studies. Sources: Expert list |
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| Mendeliome v0.0 | LIAS |
Zornitza Stark gene: LIAS was added gene: LIAS was added to Mendeliome_VCGS. Sources: Expert Review Green,Victorian Clinical Genetics Services Mode of inheritance for gene: LIAS was set to Unknown |
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