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Mandibulofacial Acrofacial dysostosis v1.12 SHROOM3 Zornitza Stark Marked gene: SHROOM3 as ready
Mandibulofacial Acrofacial dysostosis v1.12 SHROOM3 Zornitza Stark Gene: shroom3 has been classified as Amber List (Moderate Evidence).
Mandibulofacial Acrofacial dysostosis v1.12 SHROOM3 Chirag Patel Classified gene: SHROOM3 as Amber List (moderate evidence)
Mandibulofacial Acrofacial dysostosis v1.12 SHROOM3 Chirag Patel Gene: shroom3 has been classified as Amber List (Moderate Evidence).
Mandibulofacial Acrofacial dysostosis v1.12 SHROOM3 Chirag Patel Classified gene: SHROOM3 as Amber List (moderate evidence)
Mandibulofacial Acrofacial dysostosis v1.12 SHROOM3 Chirag Patel Gene: shroom3 has been classified as Amber List (Moderate Evidence).
Mandibulofacial Acrofacial dysostosis v1.11 SHROOM3 Chirag Patel Classified gene: SHROOM3 as Amber List (moderate evidence)
Mandibulofacial Acrofacial dysostosis v1.11 SHROOM3 Chirag Patel Gene: shroom3 has been classified as Amber List (Moderate Evidence).
Mandibulofacial Acrofacial dysostosis v1.10 SHROOM3 Chirag Patel gene: SHROOM3 was added
gene: SHROOM3 was added to Mandibulofacial Acrofacial dysostosis. Sources: Literature
Mode of inheritance for gene: SHROOM3 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: SHROOM3 were set to PMID: 39875538
Phenotypes for gene: SHROOM3 were set to Craniofacial microsomia MONDO:0015397
Review for gene: SHROOM3 was set to AMBER
Added comment: SHROOM3 has been implicated in facial development via GWAS, with association between SHROOM3 and HFM, cleft lip/palate, orofacial clefts, and neural tube defects. Human embryo expression data shows that SHROOM3 is mainly expressed in craniofacial mesoderm, neural progenitor cells, and somites in the head and trunk regions. Mouse Genome Informatics data shows that Shroom3 is expressed in various tissues during different stages of embryonic development, including the head mesenchyme, ear, eye, face, and nose.

Li et al. (2025) performed SHROOM3 gene sequencing in 320 sporadic hemifacial microsomia patients. They identified 7 individuals with 7 deleterious missense variants (MAF <0.005, CADD >20, predicted deleterious with >3 silico tools). No in vitro/in vivo functional studies to assess the consequences of the variants and their role in HFM.
Sources: Literature