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Renal Tubulopathies and related disorders v1.18 SLC25A25 Zornitza Stark Marked gene: SLC25A25 as ready
Renal Tubulopathies and related disorders v1.18 SLC25A25 Zornitza Stark Gene: slc25a25 has been classified as Red List (Low Evidence).
Renal Tubulopathies and related disorders v1.18 SLC25A25 Zornitza Stark Classified gene: SLC25A25 as Red List (low evidence)
Renal Tubulopathies and related disorders v1.18 SLC25A25 Zornitza Stark Gene: slc25a25 has been classified as Red List (Low Evidence).
Renal Tubulopathies and related disorders v1.17 SLC25A25 Sarah Milton gene: SLC25A25 was added
gene: SLC25A25 was added to Renal Tubulopathies and related disorders. Sources: Literature
Mode of inheritance for gene: SLC25A25 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: SLC25A25 were set to 34346195
Phenotypes for gene: SLC25A25 were set to Nephrolithiasis MONDO:0008171,SLC25A25 related
Penetrance for gene: SLC25A25 were set to Incomplete
Review for gene: SLC25A25 was set to RED
Added comment: SLC25A25 encodes mitochondrial ATP-Mg/Pi carrier 3

A single missense variant was reported in 2 families with renal stones in 2021 by Jabalameli et al (PMID: 3436195).
In family 1 there was 4 affected individuals who shared the same heterozygous variant NM_001330988.2 c.1083G>C|p.Gln361His, however this variant was also seen in 7 individuals in the family without stones
In family 2 there were 7 affected individuals who also had p.Gln361His however this variant was also seen in 3 family members without stones.

This variant is located within the mitochondrial carrier domain and functional studies were performed looking at uptake of radioactive ATP compared to wild type. These studies demonstrated the variant protein had approximately 21% activity compared to wild type.

The variant was proposed to have incomplete penetrance and it should be noted there is 4352 heterozygotes in gnomad 4.

At this time there is insufficient evidence for a gene disease association between SLC25A25 and nephrolithiasis.
Sources: Literature