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Clefting disorders v0.217 PGAP3 Zornitza Stark Marked gene: PGAP3 as ready
Clefting disorders v0.217 PGAP3 Zornitza Stark Gene: pgap3 has been classified as Green List (High Evidence).
Clefting disorders v0.217 PGAP3 Zornitza Stark Classified gene: PGAP3 as Green List (high evidence)
Clefting disorders v0.217 PGAP3 Zornitza Stark Gene: pgap3 has been classified as Green List (High Evidence).
Clefting disorders v0.216 PGAP3 Zornitza Stark gene: PGAP3 was added
gene: PGAP3 was added to Clefting disorders. Sources: Expert Review
Mode of inheritance for gene: PGAP3 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: PGAP3 were set to 28390064; 37010288
Phenotypes for gene: PGAP3 were set to Hyperphosphatasia with impaired intellectual development syndrome 4, OMIM:615716
Review for gene: PGAP3 was set to GREEN
Added comment: PMID:28390064 - 10 individuals from eight families presented with developmental delay, severe intellectual disability, distinct facial dysmorphism and increased alkaline phosphatase. Nine individuals from seven families were homozygous for the same variant (c.402dupC/ p.M135Hfs*28), while one had a different homozygous variant ( c.817_820delGACT/ p.D273Sfs*37). Of nine individuals with p.M135Hfs*28 variant, eight from seven families (except one of the two patients from family 7) had cleft palate. But, the only patient with the different variant did not have cleft palate.

DECIPHER database - Of seven individuals reported with biallelic sequence variants, three with homozygous variants were reported with cleft palate and two with compound heterozygous variants were reported with cleft soft palate (PMID:37010288).
Sources: Expert Review